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Insect Biochemistry and Molecular Biology

○ Elsevier BV

Preprints posted in the last 30 days, ranked by how well they match Insect Biochemistry and Molecular Biology's content profile, based on 30 papers previously published here. The average preprint has a 0.02% match score for this journal, so anything above that is already an above-average fit.

1
Host-dependent salivary effector candidates and predicted plant immune targets in Spodoptera frugiperda

Pandey, S.; Shilpi, S.; Roshanlal, V.; Meena, H. S.; Singh, C. P.; Shukla, J. N.

2026-09-23 molecular biology 10.64898/2026.09.21.753394 medRxiv
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Salivary secretions of herbivorous insects contain proteins that modulate plant defence and facilitate herbivory. Despite the broad host range of Spodoptera frugiperda, a major agricultural pest, its salivary molecular arsenal involved in interactions with different host plants remains poorly understood. In particular, the salivary proteins induced during feeding on different host plants and their potential interactions with plant immune components remain largely unexplored. To address this gap, we generated salivary gland transcriptomes from larvae reared on an artificial diet as well as larvae fed on tomato or chickpea plants. Comparative transcriptomic analysis identified salivary genes that were differentially expressed in response to plant feeding compared with the artificial diet. The encoded proteins were subsequently analysed using a secretory protein prediction pipeline to identify host-induced putatively secreted proteins with potential effector functions. Candidate salivary effectors were further investigated using large-scale in silico protein-protein interaction analyses with AlphaPulldown to predict their interactions with immune-pathway associated proteins of tomato and chickpea. This analysis identified multiple putative salivary effector candidates whose expression was induced by plants feeding, with distinct candidate repertoires associated with tomato and chickpea. Predicted interactions between these candidates and plant immune-associated proteins further identified potential host targets. Together, these findings suggest that S. frugiperda may adjust its salivary molecular repertoire in response to the host plant and provide a transcriptome-wide framework for validating effector-target interactions and elucidating the molecular mechanisms underlying S. frugiperda-plant interactions.

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Biosynthesis of prenylated flavonoids by two membrane-bound prenyltransferases in glandular trichomes of Macaranga tanarius.

Munakata, R.; Maeda, Y.; Shimizu, R.; Sugiyama, A.; Kumazawa, S.; Fukumoto, S.; Yazaki, K.

2026-09-24 biochemistry 10.64898/2026.09.23.753730 medRxiv
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Macaranga tanarius (Euphorbiaceae), a myrmecophilic plant grown in subtropical countries, was identified as a source of Okinawan propolis, a honeybee product, which is glandular trichomes developed on the surface of the fruits. This tissue contains a high amount of characteristic geranylated flavonoids known as nymphaeols (nymphaeol A - C and isonymphaeol B), which exhibit strong antioxidant activity. In this study, we characterized the structure of glandular trichomes of M. tanarius, showing that they are sac-like structures containing drupelet-like aggregates of secretary cells, and a subcuticular cavity was also observed. From a cDNA library, we identified two prenyltransferase (PT) genes involved in biosynthesis of nymphaeols, and a PT gene grouped in a primary metabolic PT. Our biochemical experiments demonstrated that one of the former secondary metabolic PTs (MtPT1) is a B-ring-specific geranyltransferase for eriodictyol to yield nymphaeols B and isonymphaeol B. MtPT1 was unusual for a plant PT, an enzyme that yielded multiple reaction products. The other PT (MtPT3) transferred a geranyl moiety to the A-ring of eriodictyol to form nymphaeol A. Although dimethylallyl diphosphate (DMAPP) was not recognized as its prenyl donor substrate of eriodictyol, giving a B-ring geranylated eriodyctiol as the prenyl acceptor substrate, this enzyme used DMAPP to attach the prenyl moiety to the A-ring and produced nymphaeol C. These data suggest that M. tanarius has evolved its PT function to produce a diverse range of prenylated flavonoids using a limited set of genes.

3
Context and exposure history shape insecticide sensitivity in Drosophila melanogaster

Plavotic, A.; Ansorge, B.; Sunderbrink, E.; Classen, A.-K.

2026-09-28 pharmacology and toxicology 10.64898/2026.09.28.753401 medRxiv
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Current insecticide toxicology still lacks an integrated understanding of how lethal and sublethal exposure shape organismal performance across biologically and environmentally relevant contexts. In particular, insecticide susceptibility may vary with physiological state, environmental conditions, and recent exposure history, factors that are only partially captured by standardized toxicity assessments. Here, using Drosophila melanogaster, we systematically compared responses to three insecticides with distinct modes of action - acetamiprid, chlorantraniliprole, and deltamethrin - across developmental stages, sexes, adult ages, and ambient temperatures. Insecticide sensitivity varied substantially across these conditions, with temperature modulating toxicity in a compound-dependent manner. Notably, deltamethrin caused substantial lethality at concentrations more than 10,000-fold below approved field application rates. Beyond these context-dependent differences in acute toxicity, sublethal pre-exposure to each insecticide rapidly reduced lethality during a subsequent challenge with the same compound, with increased tolerance already detectable after 24 h. Importantly, these exposure conditions that enhanced insecticide tolerance were associated with reduced resistance to environmental challenges, including heat and nutrient starvation, revealing a potential trade-off in organismal stress resilience. Acetamiprid exposure further altered reproductive performance in a concentration-dependent manner, with higher exposure reducing egg production while increasing developmental success among the resulting offspring, such that the number of offspring reaching adulthood remained largely unchanged. Together, these findings demonstrate that insecticide susceptibility is highly context dependent and can be rapidly modified by recent exposure history. We identify short-term, compound-specific, and potentially costly tolerance as an underappreciated consequence of insecticide exposure and highlight the importance of incorporating biological context, environmental conditions, and sublethal exposure history into pesticide risk assessment.

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Insecticide resistance of Culex pipiens f. pipiens is geographically widespread in Germany and displays an unmatched genotypic and phenotypic resistance state

Vandenberghe, E.; Vereecken, S.; Reuss, F.; Brusius, I.; Janssens, C.; Magdeburg, A.; Groneberg, D. A.; Muller, R.; Kramer, I. M.

2026-09-24 molecular biology 10.64898/2026.09.23.753539 medRxiv
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In Germany, insecticide use is recommended during mosquito-borne disease outbreaks, yet nationwide data on insecticide resistance in key vector species are scarce. This is particularly relevant for Culex pipiens s.l., a vector of West Nile virus. Here, we provide the first broad-scale assessment of molecular insecticide resistance (kdr and ace-1 mutations) in Cx. pipiens f. pipiens across Germany. We associated insecticide resistances with environmental conditions, potential links with mitochondrial variation of the cytochrome c oxidase I (COI) gene as well as phenotypic resistance (CDC bottle assay with permethrin) of the Frankfurt population with elevated kdr frequencies. Kdr resistance alleles were detected in German Cx. pipiens f. pipiens reaching frequencies of up to 50% in the metropolitan areas of Berlin and Frankfurt am Main. Annual precipitation was negatively associated with kdr allele frequency. Interestingly, ace-1 resistance mutations were only present in the metropolitan area of Frankfurt am Main and in Muggensturm (Rhine valley, southwestern Germany). COI haplotype analyses revealed low genetic variability within German Cx. pipiens f. pipiens populations with no association to the insecticide resistance genotype. Phenotypic assays of the Frankfurt population showed early signs of permethrin resistance, but unmatched genotypic and phenotypic resistance state. This study provides the first broad-scale assessment of molecular insecticide resistance in Cx. pipiens f. pipiens across Germany, establishing a baseline for resistance surveillance and vector control. Further research is needed to identify factors shaping phenotypic resistance, as molecular markers alone may not reliably predict resistance. Since sampling was restricted to urban green spaces, broader sampling across environmental gradients is needed to identify additional environmental effectors.

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Single-point mutation alters odorant receptor sensitivity associated with host plant specialization in Spodoptera moths

Comte, A.; Lalis, M.; Zhang, S.; Thorhallsson, A.; Moracci, R.; Gevar, J.; Montagne, N.; Topin, J.; Mitchell, A.; Fiorucci, S.; Jacquin-Joly, E.

2026-09-28 molecular biology 10.64898/2026.09.24.754037 medRxiv
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Host specialization in herbivorous insects is often associated with divergence in chemosensory abilities. Here, we investigated the possible contribution of odorant receptors (ORs) in host plant restriction in the lily moth Spodoptera picta, a species specialized on Amaryllidaceae. Manual annotation of S. picta ORs in its genome revealed a repertoire similar in size and composition to those of its polyphagous sister species, S. littoralis and S. litura, suggesting that specialization did not involve major gene loss or expansion in the lily moth. To assess functional divergence beyond gene number, we applied a large scaled structure-based virtual screening approach to the entire OR repertoires of these three Spodoptera species, generating ligand-binding profiles for 120,591 volatile compounds. Among 69 1:1:1 OR orthologs, 24 exhibited divergent predicted binding spectra. We pinpointed OR29 that we also found to be highly expressed in both male and female antennae of S. picta through a RNAseq approach. Functional assays demonstrated that S. picta OR29 acquired heightened sensitivity to limonene enantiomers, volatiles emitted by host Amaryllidaceae inflorescences. Site-directed mutagenesis revealed that a single amino acid substitution within the predicted binding region underlies this shift in sensitivity. These results show that host specialization in S. picta has not been accompanied by significant OR repertoire remodeling, but rather by subtle molecular changes that fine-tune receptor sensitivity to host-derived volatiles.

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A Synergistic Terpenoid-Phenolic Defense Network Confers Resistance to Dendrolimus superans in Hybrid Larch

Panke, Y.; Maolan, L.; Linhuai, X.; Jing, L.; Chunming, L.; Hui, B.

2026-10-09 plant biology 10.64898/2026.10.07.757267 medRxiv
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To elucidate the resistance of hybrid larch (Larix spp.) clones to Dendrolimus superans and their chemical defense mechanisms, 46 clones were subjected to field feeding-infestation experiments. Insect resistance was comprehensively evaluated by the membership function method from three perspectives: insect weight change, frass weight and defoliation rate (damage consequences); pre- and post-infestation physiological indices (constitutive and induced resistance). High- and low-resistance materials screened from each perspective were further analyzed by widely targeted LC-MS metabolomics. The three damage indices differed highly significantly among clones (P<0.01) and were positively correlated, indicating abundant genetic variation in resistance. Clones such as -30-C, -35-A and -21-A showed strong overall resistance, whereas -28-E and -20-A showed high constitutive and induced resistance. Defence enzyme activities (POD, SOD, CAT, PPO and PAL) correlated closely with secondary metabolites (total phenolics, tannins and total flavonoids) and nutrients, and rose synergistically after feeding, reflecting synergy between constitutive and induced resistance. In total, 3,577 metabolites were identified, predominantly terpenoids (>90%). The three groups yielded 1,010, 1,086 and 922 differentially accumulated metabolites, and PCA separated high- from low-resistance materials in all groups. These metabolites were significantly enriched in metabolic pathways, biosynthesis of secondary metabolites, monoterpenoid and diterpenoid biosynthesis, and phenylpropanoid biosynthesis. In conclusion, resistance of hybrid larch to D. superans is jointly conferred by the defence enzyme system, secondary metabolite accumulation and a 'terpenoid-phenolic' metabolic network: terpenoids and phenolics act synergistically via the terpenoid and phenylpropanoid pathways, together forming the core of chemical defense and supporting the breeding of insect-resistant clones.

7
Early mosquito immune patterns correlate with differential Plasmodium falciparum ookinete load

Bevivino, G.; Dipaola, M. G.; Modiano, D.; Arca, B.; Lombardo, F.

2026-09-22 molecular biology 10.64898/2026.09.21.753172 medRxiv
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The innate immune response of Anopheles mosquitoes is closely associated with the successful development of Plasmodium parasites and their subsequent transmission to humans. However, the extent to which mosquito immune activation correlates with parasite burden during early sporogonic development, and how additional factors may be linked to variation in this early immune response, remains only partly understood. In this study, we examined the immune responses of individual Anopheles coluzzii mosquitoes fed on Plasmodium falciparum infected blood with identical gametocytemia, yet exhibiting different infection intensities at the ookinete stage. We focused on the critical window of ookinete maturation and midgut traversal (12 to 36 hours post-infection), a key phase for parasite establishment, while minimizing confounding factors such as mosquito age, microbiota composition, blood meal variability, and experimental noise. Ookinete burden was estimated in individual mosquitoes by quantifying four well established stage-specific transcripts (ctrp, warp, soap, and cht1), allowing stratification into "low" and "high" ookinete load groups prior to RNA-seq analysis. Transcriptional profiling revealed clear differences between these two conditions, with mosquitoes carrying lower ookinete loads exhibiting stronger upregulation of immune-related genes compared to those with higher burdens, indicating that the reduced parasite establishment during the very early stages of infection is strictly associated with an effective immune activation. Notably, genes involved in L-arginine homeostasis were significantly modulated, highlighting a pathway not extensively explored in the context of mosquito anti-Plasmodium defense. Overall, our findings show that ookinete burden correlates with distinct mosquito transcriptional states during early infection and emphasize the value of ookinete-specific transcripts quantification for dissecting early vector-parasite interactions.

8
Alternative oxidase in trypanosomatids

Zahonova, K.; Gahura, O.; Benedikova, K.; Trusina, N.; Kalita, E.; Chmelova, L.; Skodova-Sverakova, I.; Zikova, A.; Yurchenko, V.

2026-09-28 biochemistry 10.64898/2026.09.27.754813 medRxiv
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Background. Alternative oxidase (AOX) is a mitochondrial terminal oxidase that provides an alternative route for electron transfer, contributing to respiratory flexibility and redox homeostasis under stress conditions. In trypanosomatids, AOX displays a highly uneven distribution associated with extensive diversification of mitochondrial electron transport chains (ETCs). In addition to canonical AOX, many trypanosomatids encode an enigmatic AOX-like protein (AOX-L), whose evolutionary origin and functional significance remain unresolved. Results. Here, we investigated the evolutionary distribution, phylogenetic relationships, structural conservation, and functional divergence of AOX and AOX-L across euglenozoans. Comparative genomic analyses revealed a patchy distribution of both proteins among kinetoplastids, with multiple independent losses during evolution. Phylogenetic analyses demonstrated that AOX and AOX-L represent distinct evolutionary lineages, indicating independent origins rather than duplication-derived divergence. While AOX showed a conserved eukaryotic origin, AOX-L occupied a separate phylogenetic position and lacked key residues required for ubiquinol oxidation. Structural modelling revealed that AOX-L retained the characteristic AOX fold, predicted membrane association, and dimeric organization, but lacked the catalytic architecture necessary for enzymatic activity. Transcriptomic and biochemical analyses of four AOX-containing trypanosomatid species showed that AOX expression and activity correlated with mitochondrial ETC organization. Species lacking cytochrome-dependent complexes III and IV displayed substantially higher AOX expression and enzymatic activity, consistent with AOX functioning as the primary terminal oxidase in these lineages. Conversely, species retaining a canonical ETC exhibited lower AOX activity, suggesting a role in metabolic flexibility and redox regulation. Conclusions. Our study provides a comprehensive evolutionary and functional framework for alternative oxidases in trypanosomatids. We demonstrate that AOX and AOX-L are evolutionarily distinct proteins with different predicted functions: AOX maintains respiratory electron flow according to lineage-specific mitochondrial requirements, whereas AOX-L represents a structurally conserved but catalytically inactive protein family that may have acquired an alternative regulatory role. These findings highlight how mitochondrial respiratory components diversify during eukaryotic evolution and provide a basis for future investigations into the biological function of AOX-L.

9
Long-read sequencing reveals genomic landscape of structural variants in a major disease vector

Ketchum, R. N.; Trotter, A. W.; Vivero, R. J.; Pivovarnik, M. A.; Schrider, D. R.; Matute, D. R.

2026-10-07 evolutionary biology 10.64898/2026.10.05.756236 medRxiv
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The southern house mosquito Culex quinquefasciatus is a major disease vector for multiple arboviruses, including West Nile virus and St. Louis encephalitis virus. Insecticides are widely used to control Cx. quinquefasciatus populations, but resistant mosquitoes have emerged in numerous locations across the globe, including the United States. Much progress has been made in recent years in identifying insecticide resistance (IR) mutations in various pest species. In most species, these studies have focused primarily on SNPs as they are readily detectable. However, several genomic structural variants (SVs) have been experimentally shown to impact IR in Drosophila melanogaster, and structural variation has been observed in natural populations of vector species at a few genes that may be relevant to IR (e.g., cytochrome P450s). Because most population genomic data are derived from short sequencing reads, which fail to detect a large fraction of SVs, the contribution of structural variants to the evolution of IR and other adaptations in vector species is likely to be underestimated in the absence of long-read sequencing data. Here, we present the first genome-wide assessment of structural variants in Cx. quinquefasciatus from wild populations in Puerto Rico and Zambia using PacBio long-read sequencing. We constructed high-quality genome assemblies for each and found a total of 259,046 SVs which consisted predominantly of insertions and deletions. We found that 154,071 of these variants contained or overlapped genes. Of these SVs, 5,225 intersected IR genes and 56 of these were predicted to result in changes to downstream protein function. Several SVs predicted to severely impact protein-coding genes also coincided with signatures of selective sweeps, highlighting their possible role as targets of selection. Many of these variants would have gone undetected using short-read approaches, underscoring the importance of long-read sequencing for comprehensive population genetic analyses of adaptation to pesticides and other strong selective pressures, not only in insects but across the tree of life.

10
Fruit flies of the subgenera Drosophila, Siphlodora and Sophophora use different mechanisms to adapt their daily activity to long photoperiods

Deppisch, P.; Colizzi, F. S.; Helfrich-Förster, C.

2026-10-05 animal behavior and cognition 10.64898/2026.09.29.754759 medRxiv
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Over the course of evolution, many species have adapted to the environmental conditions found at higher latitudes. This is likely also true of the circadian system, which regulates daily behavior and helps measure day length to facilitate adaptation to the seasons, though how the circadian clock adapts to latitude remains largely unknown. Here, we investigated daily activity patterns under long photoperiods and in constant darkness, as well as the underlying circadian clock network, in 52 Drosophila species from around the world. We found a strong, significant positive correlation between the clock's plasticity, measured as the phase difference between morning and evening activity, and the average geographical latitude from which the species originate. The mechanisms underpinning this increase in plasticity differed between species: in the subgenus Siphlodora, the clock weakened with increasing latitude, accompanied by a reduction of the neuropeptide Pigment-Dispersing Factor in the small ventrolateral clock neurons (s-LNv), whereas in the subgenus Drosophila the opposite was true. The subgenus Sophophora, by contrast, showed a negative correlation between circadian plasticity and PDF levels in the s-LNv axons. These results suggest that Drosophila species have evolved diverse, independent strategies to adapt their circadian clock to higher latitudes.

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Genome-wide characterisation of the metallothionein gene family and their expression in response to copper in Pistia stratiotes (water lettuce).

Nyakauru, T.; O'Donovan, O.; O'Neill, D.

2026-09-24 genetics 10.64898/2026.09.19.752864 medRxiv
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Heavy metal contamination of aquatic environments poses persistent risks to ecosystems and human health. Aquatic macrophytes such as Pistia stratiotes are increasingly used for phytoremediation due to their capacity to accumulate contaminants without displaying symptoms of abiotic stress. However, the molecular mechanisms underlying their metal tolerance remain poorly understood. Metallothioneins (MTs) are cysteine-rich proteins involved in metal binding and detoxification in plants. In this study, genome-wide analysis was performed to identify and characterise candidate MT genes in P. stratiotes and to assess their transcriptional response to copper exposure. Six novel MT genes (PsMT2f, PsMT3a-d, and PsMT4) were identified and classified into MT2, MT3, and MT4 subfamilies based on conserved cysteine motifs and domain architecture. Quantitative real-time PCR showed differential and tissue-specific expression of MT genes in roots and leaves following exposure to copper for up to 4 h. These findings provide the first comprehensive characterisation of the MT gene family in P. stratiotes and demonstrate their potential role in copper tolerance, supporting the application of this species in the phytoremediation of metal-contaminated aquatic systems.

12
A Wolbachia pipientis protein confers resistance to virus infection in Drosophila melanogaster

Leech, T.; Taschke, B.; Meilenbrock, R. L.; Tain, L.; Zhang, P.; Gronke, S.; Partridge, L.

2026-09-22 molecular biology 10.64898/2026.09.21.753151 medRxiv
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The intracellular bacterium Wolbachia pipientis alters the biology of its arthropod hosts in many ways, and can increase resistance to RNA viruses in both Drosophila and mosquitoes. Wolbachia-induced pathogen blocking has generated much interest because of its potential to restrict insect vector transmission of human diseases caused by RNA viruses. However, the molecular mechanisms by which Wolbachia affects host viral resistance are still mostly elusive. We used dilp2-3,5 mutant Drosophila, which are long-lived, but only in the presence of Wolbachia, to show that the presence of Wolbachia also increased the resistance of the mutant flies to infection with Drosophila C virus (DCV), relative both to mutants lacking Wolbachia and to wild type flies with and without Wolbachia. The insulin mutant flies had higher Wolbachia titres than wild type flies. By RNA-seq analysis of the Wolbachia transcriptome, we identified Wolbachia genes that were more strongly expressed in dilp2-3,5 mutant flies. Ankyrin-domain-containing proteins were among the most strongly up-regulated and they are predicted to be secreted effector proteins. To address their effect on host physiology, we generated 4 transgenic fly lines each with inducible expression of a different genes encoding ankyrin-domain-containing proteins. Expression of 3 of these did not cause obvious effects, but expression of WD0754 at high levels severely shortened fly survival. Interestingly, however, chronic low-level induction of WD0754 increased the resistance of the flies to DCV infection. Proteomics analysis showed a robust, tissue-specific, anti-viral response upon WD0754 induction, and identified the NFkB-like IMD pathway as a potential mediator of the antiviral activity of WD0754. Consistently, WD0754 expression activated Relish, a key downstream transcriptional mediator of IMD signalling, while loss-of Relish blocked the antiviral effect of WD0754. In summary, we identified a Wolbachia-derived ankyrin domain containing protein that modulates host immunity through the IMD pathway.

13
RISC-Bound Small RNA Sequencing Provides Insights into Guide Strand Selection and siRNA Trimming and Tailing Following Insecticidal dsRNA Delivery

Guney, G.; Plathner, P.; Scholten, S.; Cedden, D.

2026-09-22 zoology 10.64898/2026.09.18.748846 medRxiv
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RNA interference (RNAi) offers a sequence-specific approach to pest control. In insects, Dicer-2 processes double-stranded RNA (dsRNA) into small interfering RNA (siRNA) duplexes, from which the RNA-induced silencing complex (RISC) retains a guide strand. Only antisense-loaded RISC can mediate cleavage of the target transcript. However, how sequence features shape the RISC-bound siRNA pool in pests remains poorly understood, limiting opportunities for sequence optimization. Here, we profiled RISC-bound siRNAs following injection of 34 insecticidal dsRNAs targeting 11 essential genes in Tribolium castaneum larvae. We computationally reconstructed 7,879 siRNA pairs and examined associations between sequence features and strand bias. Differences in GC identity at terminal paired positions 1 to 5, used as a proxy for local thermodynamic asymmetry, correlated with strand bias, with the strongest correlations at the first two paired positions. ORF targeting and reduced predicted antisense self-folding were also associated with higher antisense fractions. Analysis of non-templated terminal additions revealed predominantly 3-prime uridylation, a known signature of small RNA turnover, along with putative 3-prime trimming. Among ORF-associated siRNA pairs, sense strands showed higher relative U-tailing abundance, based on 3-prime uridylated and putatively trimmed-and-3-prime-uridylated reads relative to perfect 21-nt reads, than antisense strands. Antisense strands with the least predicted self-folding also showed low relative U-tailing abundance. These observations are consistent with sequence-dependent contributions from both guide-strand selection and differential post-RISC-loading siRNA retention, although a causal link remains to be established. The identified associations provide a basis for testing whether dsRNA sequence optimization can improve pest control efficacy and reduce off-target activity.

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Association between breeding-habitat bacterial communities and oviposition behavior of Aedes aegypti: Insights from arboviral outbreak-affected areas of Pune, Western India

Singh, S.; Raikar, M.; Dongardive, S.; Ramdasi, A.; Kumar, S.; Dhaigude, S.; Kadam, P.; Viswanathan, R.; Yadav, A.; Karmodiya, K.; Lole, K. S.; Banerjee, K.; PR, S.; De, T. D.

2026-10-02 genomics 10.64898/2026.10.01.755851 medRxiv
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Aedes aegypti, an important vector of several arboviral diseases, is highly adapted to human-associated environments and commonly exploits anthropogenic water-holding containers for breeding. Understanding the ecological factors governing oviposition-site selection is essential for developing sustainable vector control strategies. Previous studies have established that microbial communities in breeding waters influence mosquito oviposition-site selection through the production of volatile organic compounds. Importantly, rapid urbanization in India has increased the availability of artificial breeding habitats for Ae. aegypti, potentially facilitating the transmission and persistence of arboviral diseases. However, the composition of bacterial communities in these larval habitats and their potential role in shaping the oviposition behavior of Ae. aegypti remain poorly characterized in the Indian context. Here, we investigated the bacterial diversity and community composition of Aedes larval habitats during the 2024 Zika and chikungunya outbreaks in Pune, India. Water samples, collected from artificial urban containers and natural freshwater habitats, were subjected to 16S rRNA amplicon sequencing. Artificial breeding habitats exhibited significantly higher bacterial diversity and were enriched with Enterobacter spp. compared with natural habitats. Oviposition bioassays further demonstrated a strong preference of gravid Ae. aegypti females for Enterobacter-conditioned water. GCMS analysis of bacterial suspension identified indole as a prominent volatile metabolite associated with Enterobacter, suggesting its possible role in mediating oviposition site selection. Together, these findings provide insights into the microbial and chemical ecology of Ae. aegypti breeding habitats and establish a basis for investigating microbial volatile cues as potential targets for vector surveillance and environmentally sustainable attract-and-kill strategies.

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Fluorescent Ubiquitination-based Trbl Turnover Indicator (FUTTI): A tool to detect activity of the Tribbles pseudokinase in vivo

Nauman, C.; Shayestehpour, S.; O'Connor, S.; Fischer, Z.; Dobens, L.

2026-10-01 genetics 10.64898/2026.09.25.753906 medRxiv
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Targeted protein turnover of the transcription factor C/EBP is enhanced by the Tribbles (Trib) pseudokinase family of adaptor proteins, which bind to a conserved degron motif in C/EBP substrate and recruit a cognate COP1 E3 ligase to ubiquitinate C/EBP for degradation. We identified a conserved degron in the Drosophila C/EBP ortholog Slbo and fused this motif to a fluorescent protein (GFP or RFP) under the control of a constitutive promoter. Transgenic flies expressing this fluorescent protein (FP)::degron transgene, which we call the Fluorescent Ubiquitination-based Trbl Turnover Indicator (or FUTTI) sensor, showed reduced levels of fluorescence in response to increased levels of Drosophila Tribbles (Trbl) and conversely, increased levels when Trbl activity was reduced. Mutations in the Trbl conserved pseudokinase substrate binding pocket and in a divergent PEST-like motif in the C-terminal tail region disrupted Trbl activity in the FUTTI assay. These data indicate that FUTTI will be a valuable tool to identify sites of Trbl activity in vivo and the critical features of the protein required for function.

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Xrp1 integrates cellular stress through different control modes in Drosophila

Cazals, E.; Alexandre, C.; Gaugue, I.; Igaki, T.; Leopold, P.; Vincent, J.-P.; Estella, C.; Boulan, L.

2026-10-12 developmental biology 10.64898/2026.10.09.757274 medRxiv
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Cells and tissues have the ability to respond to different stresses and maintain their homeostasis. The b-Zip transcription factor Xrp1 was found to play a pivotal role in this context in Drosophila. Xrp1 is required for the response to irradiation, in genetic conditions of ribosomal protein (Rp) deficiency leading to cell competition, and more generally in mediating the Integrated Stress Response (ISR). However, how these diverse stresses converge to and activate Xrp1 is still unclear. Our results demonstrate the existence of three separate mechanisms of Xrp1 induction. In response to Rp stress, a short isoform of Xrp1 is produced and requires the function of the ribosomal protein RpS12. In response to irradiation, a specific mRNA isoform is transcriptionally induced, which encodes the Xrp1-short protein isoform, in a p53-dependent manner. In response to the ISR, the long isoform of Xrp1 is translated by the derepression of a uORF present on the Xrp1 5'UTR, a mechanism that requires eIF2 phosphorylation, RpS12, and a transcriptional induction by ATF4. Therefore, our work provides a comprehensive understanding of the role of Xrp1 in different situations of cellular stress, illustrating the complex level of integration of the mechanisms controlling this central gene.

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Neuropeptide T2A-GAL4 knock-ins illustrate practical considerations for interpreting GAL4 reporter patterns in Drosophila

Jinnai, K.; Ozawa, K.; Yajima, K.; Tanimoto, H.; Kondo, S.

2026-09-22 genetics 10.64898/2026.09.16.750837 medRxiv
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Transgenic GAL4 lines are widely used in Drosophila to label and manipulate specific cell types, but the resulting reporter expression patterns do not always represent ongoing driver activity. We generated a collection of neuropeptide T2A-GAL4 knock-ins and characterized their expression by native-fluorescence imaging using UAS-CD8::GFP and a Brp-miRFP680 knock-in, eliminating the need for immunostaining. During characterization of these lines, we observed cases in which adult GFP patterns did not match the on-going GAL4 activity, as well as cases in which GAL4 produced adverse cellular effects. Using temperature-sensitive GAL80, we found that adult GFP expression in certain neurons driven by CCHa2-T2A-GAL4 and Dsk-T2A-GAL4 depended on GAL4 activity before eclosion and was not reproduced by adult-only induction. Several GAL4 lines also showed dominant developmental phenotypes. Heterozygous Burs-T2A-GAL4 animals, for example, displayed wing-expansion defects that were fully suppressed by GAL80. Severe wing defects were not accompanied by a reduction in the number of reporter-labeled neurons before eclosion, but the morphology of these neurons were affected. These observations illustrate how developmental driver history and GAL4-associated cellular effects can influence reporter patterns in the adult nervous system.

18
Corazonin links social role and metabolic-stress responses in honey bee workers

Scofield, S. L.; Amdam, G. V.

2026-10-07 zoology 10.64898/2026.10.06.757184 medRxiv
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Corazonin is implicated in regulating diverse behavioral and physiological responses in insects, yet its role in honey bees remains unclear. Work in social and non-social species suggests an ancestral function for corazonin as a metabolic stress signal and a derived function as a pro-foraging signal in social insects. To investigate this hypothesis, we examined corazonin signaling across worker roles and metabolic states and tested its regulatory relationships with pathways central to worker division of labor. Central corazonin levels (both transcript and peptide) were approximately threefold higher in foragers than in nurses. Acute metabolic challenge did not alter brain corazonin but strongly upregulated fat body corazonin receptor (CrzR) transcript in nurses only, suggesting role-specific induction of peripheral sensitivity to corazonin signaling. Injection of synthetic corazonin decreased fat body insulin receptor substrate transcript, while transcripts of vitellogenin (Vg), unpaired-like A, ecdysone receptor B, and Cyp314a1 were unaffected. Measures of gustatory responsiveness, starvation resistance, and hemolymph sugar levels were similarly unaffected by corazonin injection. Reducing Vg through RNA interference in nurse-age bees did not affect CrzR transcript levels, despite vitellogenin's established roles in stress buffering, antioxidant defense, and lifespan. This contrast highlights the specificity of CrzR upregulation in nurses as a response to metabolic challenge rather than general stress. Together, these findings support corazonin as a co-opted nutritional signal that helps shape the forager physiological state, suggesting that it may act in part through interactions with insulin signaling rather than directly regulating classical nutritional or stress-response pathways.

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Genome sequence data of Ascogaster reticulata (Hymenoptera: Braconidae)

Yokoi, K.; Kainoh, Y.; Kanda, M.; Kuwasaki, S.; Kimura, K.; Bono, H.

2026-10-11 genomics 10.64898/2026.10.06.756916 medRxiv
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Parasitoid wasps develop in or on other arthropods and have evolved a wide range of strategies for exploiting their hosts. Ascogaster reticulata is a solitary egg to larval endoparasitoid wasp belonging to the subfamily Cheloninae of Braconidae. We constructed a genome assembly using long-read sequence data. The assembled genome was 280.5 Mbp, consisting of 209 contigs. The N50 value and GC content ratio were 13.9 Mbp and 30.43%, respectively. The percentage of transposable elements and repetitive regions was 52.43%. The predicted number of genes is 27,261. Merqury revealed that the QV value and completeness of the genome were 61.79 and 99.3917%, respectively. BUSCO analysis detected approximately 99% of the core genes. These results suggest that the genome data were of sufficient quality for use as a reference genome. Therefore, these data can be utilized as a genomic resource for comparative studies within Braconidae and for future investigations into the biology and evolution of Cheloninae parasitoid wasps.

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How opsins diversified after the teleost whole-genome duplication: Insights from two parietopsins of the red piranha, Pygocentrus nattereri

Sato, K.; Yamashita, T.; Sakai, K.; Ohuchi, H.; Kusakabe, T. G.; Gyoja, F.

2026-09-25 evolutionary biology 10.1101/2025.09.17.675483 medRxiv
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The teleost whole-genome duplication (TGD) contributed to functional diversification of opsins. Some TGD paralogs, including those of parapinopsin (PP), Vertebrate Ancient (VA) opsin, and long wavelength-sensitive (LWS) opsin, show different absorption spectra and/or expression patterns. However, our knowledge of detailed evolutionary processes and mechanisms by which TGD contributed to opsin diversification is still limited. Here, we report that TGD paralogs of parietopsin (PT1 and PT2) are retained in extant species. While most species, including the zebrafish, have only PT1, several characins, including the red piranha (Pygocentrus nattereri), retain both PT1 and PT2. The Mexican tetra (Astyanax mexicanus) and catfishes have only PT2. To assess the degree of functional diversification between PT1 and PT2, we characterized spectral properties and expression patterns. Maximum absorption spectra differ slightly among PTs. Those of red piranha PT1, PT2, Mexican tetra PT2, and Japanese catfish (Silurus asotus) PT2 were located at 517 nm, 528 nm, 517 nm, and ~535 nm, respectively. Fluorescence in situ hybridization showed that (1) piranha PT1 and PT2 are expressed in the same pineal cells, and (2) they are also co-expressed with PP1. Based on these findings, functional diversification of opsins after gene duplication is discussed.